TrypanoCyc: a community-led biochemical pathways database for Trypanosoma brucei
Identifieur interne : 003388 ( Main/Exploration ); précédent : 003387; suivant : 003389TrypanoCyc: a community-led biochemical pathways database for Trypanosoma brucei
Auteurs : Sanu Shameer [France] ; Flora J. Logan-Klumpler [Royaume-Uni] ; Florence Vinson [France] ; Ludovic Cottret [France] ; Benjamin Merlet [France] ; Fiona Achcar [Royaume-Uni] ; Michael Boshart [Allemagne] ; Matthew Berriman [Royaume-Uni] ; Rainer Breitling [Royaume-Uni] ; Frédéric Bringaud [France] ; Peter Bütikofer [Suisse] ; Amy M. Cattanach [Royaume-Uni] ; Bridget Bannerman-Chukualim [Royaume-Uni] ; Darren J. Creek [Australie] ; Kathryn Crouch [Royaume-Uni] ; Harry P. De Koning [Royaume-Uni] ; Hubert Denise [Royaume-Uni] ; Charles Ebikeme [France] ; Alan H. Fairlamb [Royaume-Uni] ; Michael A. J. Ferguson [Royaume-Uni] ; Michael L. Ginger [Royaume-Uni] ; Christiane Hertz-Fowler [Royaume-Uni] ; Eduard J. Kerkhoven [Suède] ; Pascal M Ser [Suisse] ; Paul A. M. Michels [Royaume-Uni] ; Archana Nayak [Royaume-Uni] ; David W. Nes [États-Unis] ; Derek P. Nolan [Irlande (pays)] ; Christian Olsen [États-Unis] ; Fatima Silva-Franco [Royaume-Uni] ; Terry K. Smith [Royaume-Uni] ; Martin C. Taylor [Royaume-Uni] ; Aloysius G. M. Tielens [Pays-Bas] ; Michael D. Urbaniak [Royaume-Uni] ; Jaap J. Van Hellemond [Pays-Bas] ; Isabel M. Vincent [Royaume-Uni] ; Shane R. Wilkinson [Royaume-Uni] ; Susan Wyllie [Royaume-Uni] ; Fred R. Opperdoes [Belgique] ; Michael P. Barrett [Royaume-Uni] ; Fabien Jourdan [France]Source :
- Nucleic Acids Research [ 0305-1048 ] ; 2014.
Descripteurs français
- KwdFr :
- MESH :
- génétique : Trypanosoma brucei brucei.
- métabolisme : Trypanosoma brucei brucei.
- Bases de données chimiques, Fouille de données, Internet, Protéomique, Voies et réseaux métaboliques.
English descriptors
- KwdEn :
- MESH :
- genetics : Trypanosoma brucei brucei.
- metabolism : Trypanosoma brucei brucei.
- Data Mining, Databases, Chemical, Internet, Metabolic Networks and Pathways, Proteomics.
Abstract
The metabolic network of a cell represents the catabolic and anabolic reactions that interconvert small molecules (metabolites) through the activity of enzymes, transporters and non-catalyzed chemical reactions. Our understanding of individual metabolic networks is increasing as we learn more about the enzymes that are active in particular cells under particular conditions and as technologies advance to allow detailed measurements of the cellular metabolome. Metabolic network databases are of increasing importance in allowing us to contextualise data sets emerging from transcriptomic, proteomic and metabolomic experiments. Here we present a dynamic database, TrypanoCyc (
Url:
DOI: 10.1093/nar/gku944
PubMed: 25300491
PubMed Central: 4384016
Affiliations:
- Allemagne, Australie, Belgique, France, Irlande (pays), Pays-Bas, Royaume-Uni, Suisse, Suède, États-Unis
- Angleterre, Bavière, Canton de Berne, District de Haute-Bavière, Grand Londres, Grand Manchester, Midi-Pyrénées, New Jersey, Occitanie (région administrative), Texas, Utrecht (province), Écosse, Île-de-France
- Berne, Glasgow, Londres, Manchester, Munich, Paris, Toulouse, Utrecht, Édimbourg
- Université Louis-et-Maximilien de Munich, Université d'Utrecht, Université d'Édimbourg, Université de Berne, Université de Glasgow, Université de Londres, Université de Manchester
Links toward previous steps (curation, corpus...)
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- to stream Ncbi, to step Checkpoint: 001E92
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- to stream Main, to step Curation: 003388
Le document en format XML
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National de la Recherche Agronomique (INRA), UMR1331, TOXALIM (Research Centre in Food Toxicology), Université de Toulouse, Toulouse, France</nlm:aff><country xml:lang="fr">France</country><wicri:regionArea>Institut National de la Recherche Agronomique (INRA), UMR1331, TOXALIM (Research Centre in Food Toxicology), Université de Toulouse, Toulouse</wicri:regionArea><placeName><region type="region">Occitanie (région administrative)</region><region type="old region">Midi-Pyrénées</region><settlement type="city">Toulouse</settlement></placeName></affiliation></author><author><name sortKey="Achcar, Fiona" sort="Achcar, Fiona" uniqKey="Achcar F" first="Fiona" last="Achcar">Fiona Achcar</name><affiliation wicri:level="4"><nlm:aff id="AFF4">University of Glasgow, Glasgow, Scotland, G12 8QQ, UK</nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>University of Glasgow, Glasgow, Scotland, G12 8QQ</wicri:regionArea><orgName type="university">Université de 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Berne</orgName><placeName><settlement type="city">Berne</settlement><region nuts="3" type="region">Canton de Berne</region></placeName></affiliation></author><author><name sortKey="Cattanach, Amy M" sort="Cattanach, Amy M" uniqKey="Cattanach A" first="Amy M." last="Cattanach">Amy M. Cattanach</name><affiliation wicri:level="4"><nlm:aff id="AFF4">University of Glasgow, Glasgow, Scotland, G12 8QQ, UK</nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>University of Glasgow, Glasgow, Scotland, G12 8QQ</wicri:regionArea><orgName type="university">Université de Glasgow</orgName><placeName><settlement type="city">Glasgow</settlement><region type="country">Écosse</region></placeName></affiliation></author><author><name sortKey="Bannerman Chukualim, Bridget" sort="Bannerman Chukualim, Bridget" uniqKey="Bannerman Chukualim B" first="Bridget" last="Bannerman-Chukualim">Bridget Bannerman-Chukualim</name><affiliation wicri:level="1"><nlm:aff id="AFF2">The Wellcome Trust Sanger Institute, Hinxton, Cambridge CB10 1SA, UK</nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>The Wellcome Trust Sanger Institute, Hinxton, Cambridge CB10 1SA</wicri:regionArea><wicri:noRegion>Cambridge CB10 1SA</wicri:noRegion></affiliation></author><author><name sortKey="Creek, Darren J" sort="Creek, Darren J" uniqKey="Creek D" first="Darren J." last="Creek">Darren J. Creek</name><affiliation wicri:level="1"><nlm:aff id="AFF9">Monash Institute of Pharmaceutical Sciences, Monash University, Parkville 3052, Australia</nlm:aff><country xml:lang="fr">Australie</country><wicri:regionArea>Monash Institute of Pharmaceutical Sciences, Monash University, Parkville 3052</wicri:regionArea><wicri:noRegion>Parkville 3052</wicri:noRegion></affiliation></author><author><name sortKey="Crouch, Kathryn" sort="Crouch, Kathryn" uniqKey="Crouch K" first="Kathryn" last="Crouch">Kathryn Crouch</name><affiliation wicri:level="4"><nlm:aff id="AFF4">University of Glasgow, Glasgow, Scotland, G12 8QQ, UK</nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>University of Glasgow, Glasgow, Scotland, G12 8QQ</wicri:regionArea><orgName type="university">Université de Glasgow</orgName><placeName><settlement type="city">Glasgow</settlement><region type="country">Écosse</region></placeName></affiliation></author><author><name sortKey="De Koning, Harry P" sort="De Koning, Harry P" uniqKey="De Koning H" first="Harry P." last="De Koning">Harry P. De Koning</name><affiliation wicri:level="4"><nlm:aff id="AFF4">University of Glasgow, Glasgow, Scotland, G12 8QQ, UK</nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>University of Glasgow, Glasgow, Scotland, G12 8QQ</wicri:regionArea><orgName type="university">Université de Glasgow</orgName><placeName><settlement type="city">Glasgow</settlement><region type="country">Écosse</region></placeName></affiliation></author><author><name sortKey="Denise, Hubert" sort="Denise, Hubert" uniqKey="Denise H" first="Hubert" last="Denise">Hubert Denise</name><affiliation wicri:level="1"><nlm:aff id="AFF10">European Bioinformatics Institute (EMBL-EBI), Hinxton, Cambridge, CB10 1SD, UK</nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>European Bioinformatics Institute (EMBL-EBI), Hinxton, Cambridge, CB10 1SD</wicri:regionArea><wicri:noRegion>CB10 1SD</wicri:noRegion></affiliation></author><author><name sortKey="Ebikeme, Charles" sort="Ebikeme, Charles" uniqKey="Ebikeme C" first="Charles" last="Ebikeme">Charles Ebikeme</name><affiliation wicri:level="3"><nlm:aff id="AFF11">ISSC, UNESCO, F-75732 CEDEX 15, Paris, France</nlm:aff><country xml:lang="fr">France</country><wicri:regionArea>ISSC, UNESCO, F-75732 CEDEX 15, Paris</wicri:regionArea><placeName><region type="region">Île-de-France</region><region type="old region">Île-de-France</region><settlement type="city">Paris</settlement></placeName></affiliation></author><author><name sortKey="Fairlamb, Alan H" sort="Fairlamb, Alan H" uniqKey="Fairlamb A" first="Alan H." last="Fairlamb">Alan H. Fairlamb</name><affiliation wicri:level="1"><nlm:aff id="AFF12">University of Dundee, Dundee, Scotland, DD1 4HN, UK</nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>University of Dundee, Dundee, Scotland, DD1 4HN</wicri:regionArea><wicri:noRegion>DD1 4HN</wicri:noRegion></affiliation></author><author><name sortKey="Ferguson, Michael A J" sort="Ferguson, Michael A J" uniqKey="Ferguson M" first="Michael A. J." last="Ferguson">Michael A. J. Ferguson</name><affiliation wicri:level="1"><nlm:aff id="AFF12">University of Dundee, Dundee, Scotland, DD1 4HN, UK</nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>University of Dundee, Dundee, Scotland, DD1 4HN</wicri:regionArea><wicri:noRegion>DD1 4HN</wicri:noRegion></affiliation></author><author><name sortKey="Ginger, Michael L" sort="Ginger, Michael L" uniqKey="Ginger M" first="Michael L." last="Ginger">Michael L. Ginger</name><affiliation wicri:level="1"><nlm:aff id="AFF13">Divisionof Biomedical and Life Sciences, Lancaster University, Bailrigg, Lancaster, LA1 4YG, UK</nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>Divisionof Biomedical and Life Sciences, Lancaster University, Bailrigg, Lancaster, LA1 4YG</wicri:regionArea><wicri:noRegion>LA1 4YG</wicri:noRegion></affiliation></author><author><name sortKey="Hertz Fowler, Christiane" sort="Hertz Fowler, Christiane" uniqKey="Hertz Fowler C" first="Christiane" last="Hertz-Fowler">Christiane Hertz-Fowler</name><affiliation wicri:level="1"><nlm:aff id="AFF14">University of Liverpool, Liverpool, Merseyside L69 3BX, UK</nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>University of Liverpool, Liverpool, Merseyside L69 3BX</wicri:regionArea><wicri:noRegion>Merseyside L69 3BX</wicri:noRegion></affiliation></author><author><name sortKey="Kerkhoven, Eduard J" sort="Kerkhoven, Eduard J" uniqKey="Kerkhoven E" first="Eduard J." last="Kerkhoven">Eduard J. Kerkhoven</name><affiliation wicri:level="1"><nlm:aff id="AFF15">Chalmers University of Technology, Kemivägen 10, 412 96, Göteborg, Sweden</nlm:aff><country xml:lang="fr">Suède</country><wicri:regionArea>Chalmers University of Technology, Kemivägen 10, 412 96, Göteborg</wicri:regionArea><wicri:noRegion>Göteborg</wicri:noRegion></affiliation></author><author><name sortKey="M Ser, Pascal" sort="M Ser, Pascal" uniqKey="M Ser P" first="Pascal" last="M Ser">Pascal M Ser</name><affiliation wicri:level="1"><nlm:aff id="AFF16">Swiss Tropical and Public Health Institute, Socinstr. 57, Basel 4051, Switzerland</nlm:aff><country xml:lang="fr">Suisse</country><wicri:regionArea>Swiss Tropical and Public Health Institute, Socinstr. 57, Basel 4051</wicri:regionArea><wicri:noRegion>Basel 4051</wicri:noRegion></affiliation></author><author><name sortKey="Michels, Paul A M" sort="Michels, Paul A M" uniqKey="Michels P" first="Paul A. M." last="Michels">Paul A. M. Michels</name><affiliation wicri:level="4"><nlm:aff id="AFF17">University of Edinburgh, Mayfield Road, Edinburgh EH9 3JU, UK</nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>University of Edinburgh, Mayfield Road, Edinburgh EH9 3JU</wicri:regionArea><orgName type="university">Université d'Édimbourg</orgName><placeName><settlement type="city">Édimbourg</settlement><region type="country">Écosse</region></placeName></affiliation></author><author><name sortKey="Nayak, Archana" sort="Nayak, Archana" uniqKey="Nayak A" first="Archana" last="Nayak">Archana Nayak</name><affiliation wicri:level="4"><nlm:aff id="AFF4">University of Glasgow, Glasgow, Scotland, G12 8QQ, UK</nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>University of Glasgow, Glasgow, Scotland, G12 8QQ</wicri:regionArea><orgName type="university">Université de Glasgow</orgName><placeName><settlement type="city">Glasgow</settlement><region type="country">Écosse</region></placeName></affiliation></author><author><name sortKey="Nes, David W" sort="Nes, David W" uniqKey="Nes D" first="David W." last="Nes">David W. Nes</name><affiliation wicri:level="2"><nlm:aff id="AFF18">Texas Tech University, Lubbock, TX, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Texas Tech University, Lubbock, TX</wicri:regionArea><placeName><region type="state">Texas</region></placeName></affiliation></author><author><name sortKey="Nolan, Derek P" sort="Nolan, Derek P" uniqKey="Nolan D" first="Derek P." last="Nolan">Derek P. Nolan</name><affiliation wicri:level="1"><nlm:aff id="AFF19">Trinity College Dublin, Dublin 2, Ireland</nlm:aff><country xml:lang="fr">Irlande (pays)</country><wicri:regionArea>Trinity College Dublin, Dublin 2</wicri:regionArea><wicri:noRegion>Dublin 2</wicri:noRegion></affiliation></author><author><name sortKey="Olsen, Christian" sort="Olsen, Christian" uniqKey="Olsen C" first="Christian" last="Olsen">Christian Olsen</name><affiliation wicri:level="2"><nlm:aff id="AFF20">Biomatters Inc. 60 Park Place, Suite 2100, Newark, NJ, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Biomatters Inc. 60 Park Place, Suite 2100, Newark, NJ</wicri:regionArea><placeName><region type="state">New Jersey</region></placeName></affiliation></author><author><name sortKey="Silva Franco, Fatima" sort="Silva Franco, Fatima" uniqKey="Silva Franco F" first="Fatima" last="Silva-Franco">Fatima Silva-Franco</name><affiliation wicri:level="1"><nlm:aff id="AFF14">University of Liverpool, Liverpool, Merseyside L69 3BX, UK</nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>University of Liverpool, Liverpool, Merseyside L69 3BX</wicri:regionArea><wicri:noRegion>Merseyside L69 3BX</wicri:noRegion></affiliation></author><author><name sortKey="Smith, Terry K" sort="Smith, Terry K" uniqKey="Smith T" first="Terry K." last="Smith">Terry K. Smith</name><affiliation wicri:level="1"><nlm:aff id="AFF21">University of St Andrews, St Andrews, Scotland, KY16 9ST, UK</nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>University of St Andrews, St Andrews, Scotland, KY16 9ST</wicri:regionArea><wicri:noRegion>KY16 9ST</wicri:noRegion></affiliation></author><author><name sortKey="Taylor, Martin C" sort="Taylor, Martin C" uniqKey="Taylor M" first="Martin C." last="Taylor">Martin C. Taylor</name><affiliation wicri:level="1"><nlm:aff id="AFF22">LSHTM, London, WC1E 7HT, UK</nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>LSHTM, London, WC1E 7HT</wicri:regionArea><wicri:noRegion>WC1E 7HT</wicri:noRegion></affiliation></author><author><name sortKey="Tielens, Aloysius G M" sort="Tielens, Aloysius G M" uniqKey="Tielens A" first="Aloysius G. M." last="Tielens">Aloysius G. M. Tielens</name><affiliation wicri:level="4"><nlm:aff id="AFF23">Utrecht University, Utrecht, 3508 TD, The Netherlands</nlm:aff><country xml:lang="fr">Pays-Bas</country><wicri:regionArea>Utrecht University, Utrecht, 3508 TD</wicri:regionArea><orgName type="university">Université d'Utrecht</orgName><placeName><settlement type="city">Utrecht</settlement><region nuts="2">Utrecht (province)</region></placeName></affiliation><affiliation wicri:level="1"><nlm:aff id="AFF24">Erasmus University Medical Center, Rotterdam, 3015 CE, The Netherlands</nlm:aff><country xml:lang="fr">Pays-Bas</country><wicri:regionArea>Erasmus University Medical Center, Rotterdam, 3015 CE</wicri:regionArea><wicri:noRegion>3015 CE</wicri:noRegion></affiliation></author><author><name sortKey="Urbaniak, Michael D" sort="Urbaniak, Michael D" uniqKey="Urbaniak M" first="Michael D." last="Urbaniak">Michael D. Urbaniak</name><affiliation wicri:level="1"><nlm:aff id="AFF13">Divisionof Biomedical and Life Sciences, Lancaster University, Bailrigg, Lancaster, LA1 4YG, UK</nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>Divisionof Biomedical and Life Sciences, Lancaster University, Bailrigg, Lancaster, LA1 4YG</wicri:regionArea><wicri:noRegion>LA1 4YG</wicri:noRegion></affiliation></author><author><name sortKey="Van Hellemond, Jaap J" sort="Van Hellemond, Jaap J" uniqKey="Van Hellemond J" first="Jaap J." last="Van Hellemond">Jaap J. Van Hellemond</name><affiliation wicri:level="1"><nlm:aff id="AFF24">Erasmus University Medical Center, Rotterdam, 3015 CE, The Netherlands</nlm:aff><country xml:lang="fr">Pays-Bas</country><wicri:regionArea>Erasmus University Medical Center, Rotterdam, 3015 CE</wicri:regionArea><wicri:noRegion>3015 CE</wicri:noRegion></affiliation></author><author><name sortKey="Vincent, Isabel M" sort="Vincent, Isabel M" uniqKey="Vincent I" first="Isabel M." last="Vincent">Isabel M. Vincent</name><affiliation wicri:level="4"><nlm:aff id="AFF4">University of Glasgow, Glasgow, Scotland, G12 8QQ, UK</nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>University of Glasgow, Glasgow, Scotland, G12 8QQ</wicri:regionArea><orgName type="university">Université de Glasgow</orgName><placeName><settlement type="city">Glasgow</settlement><region type="country">Écosse</region></placeName></affiliation></author><author><name sortKey="Wilkinson, Shane R" sort="Wilkinson, Shane R" uniqKey="Wilkinson S" first="Shane R." last="Wilkinson">Shane R. Wilkinson</name><affiliation wicri:level="4"><nlm:aff id="AFF25">Queen Mary University of London, London E1 4NS, UK</nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>Queen Mary University of London, London E1 4NS</wicri:regionArea><orgName type="university">Université de Londres</orgName><placeName><settlement type="city">Londres</settlement><region type="country">Angleterre</region><region type="région" nuts="1">Grand Londres</region></placeName></affiliation></author><author><name sortKey="Wyllie, Susan" sort="Wyllie, Susan" uniqKey="Wyllie S" first="Susan" last="Wyllie">Susan Wyllie</name><affiliation wicri:level="1"><nlm:aff id="AFF12">University of Dundee, Dundee, Scotland, DD1 4HN, UK</nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>University of Dundee, Dundee, Scotland, DD1 4HN</wicri:regionArea><wicri:noRegion>DD1 4HN</wicri:noRegion></affiliation></author><author><name sortKey="Opperdoes, Fred R" sort="Opperdoes, Fred R" uniqKey="Opperdoes F" first="Fred R." last="Opperdoes">Fred R. Opperdoes</name><affiliation wicri:level="1"><nlm:aff id="AFF26">University of Louvain, Brussels, B-1200, Belgium</nlm:aff><country xml:lang="fr">Belgique</country><wicri:regionArea>University of Louvain, Brussels, B-1200</wicri:regionArea><wicri:noRegion>B-1200</wicri:noRegion></affiliation></author><author><name sortKey="Barrett, Michael P" sort="Barrett, Michael P" uniqKey="Barrett M" first="Michael P." last="Barrett">Michael P. Barrett</name><affiliation wicri:level="4"><nlm:aff id="AFF4">University of Glasgow, Glasgow, Scotland, G12 8QQ, UK</nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>University of Glasgow, Glasgow, Scotland, G12 8QQ</wicri:regionArea><orgName type="university">Université de Glasgow</orgName><placeName><settlement type="city">Glasgow</settlement><region type="country">Écosse</region></placeName></affiliation></author><author><name sortKey="Jourdan, Fabien" sort="Jourdan, Fabien" uniqKey="Jourdan F" first="Fabien" last="Jourdan">Fabien Jourdan</name><affiliation wicri:level="3"><nlm:aff id="AFF1">Institut National de la Recherche Agronomique (INRA), UMR1331, TOXALIM (Research Centre in Food Toxicology), Université de Toulouse, Toulouse, France</nlm:aff><country xml:lang="fr">France</country><wicri:regionArea>Institut National de la Recherche Agronomique (INRA), UMR1331, TOXALIM (Research Centre in Food Toxicology), Université de Toulouse, Toulouse</wicri:regionArea><placeName><region type="region">Occitanie (région administrative)</region><region type="old region">Midi-Pyrénées</region><settlement type="city">Toulouse</settlement></placeName></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">25300491</idno><idno type="pmc">4384016</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4384016</idno><idno type="RBID">PMC:4384016</idno><idno type="doi">10.1093/nar/gku944</idno><date when="2014">2014</date><idno type="wicri:Area/Pmc/Corpus">002803</idno><idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Corpus" wicri:corpus="PMC">002803</idno><idno type="wicri:Area/Pmc/Curation">002653</idno><idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Curation">002653</idno><idno type="wicri:Area/Pmc/Checkpoint">001276</idno><idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Checkpoint">001276</idno><idno type="wicri:source">PubMed</idno><idno type="wicri:Area/PubMed/Corpus">003134</idno><idno type="wicri:explorRef" wicri:stream="PubMed" wicri:step="Corpus" wicri:corpus="PubMed">003134</idno><idno type="wicri:Area/PubMed/Curation">003038</idno><idno type="wicri:explorRef" wicri:stream="PubMed" wicri:step="Curation">003038</idno><idno type="wicri:Area/PubMed/Checkpoint">003038</idno><idno type="wicri:explorRef" wicri:stream="Checkpoint" wicri:step="PubMed">003038</idno><idno type="wicri:Area/Ncbi/Merge">001E92</idno><idno type="wicri:Area/Ncbi/Curation">001E92</idno><idno type="wicri:Area/Ncbi/Checkpoint">001E92</idno><idno type="wicri:doubleKey">0305-1048:2014:Shameer S:trypanocyc:a:community</idno><idno type="wicri:Area/Main/Merge">003400</idno><idno type="wicri:Area/Main/Curation">003388</idno><idno type="wicri:Area/Main/Exploration">003388</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">TrypanoCyc: a community-led biochemical pathways database for <italic>Trypanosoma brucei</italic></title><author><name sortKey="Shameer, Sanu" sort="Shameer, Sanu" uniqKey="Shameer S" first="Sanu" last="Shameer">Sanu Shameer</name><affiliation wicri:level="3"><nlm:aff id="AFF1">Institut National de la Recherche Agronomique (INRA), UMR1331, TOXALIM (Research Centre in Food Toxicology), Université de Toulouse, Toulouse, France</nlm:aff><country xml:lang="fr">France</country><wicri:regionArea>Institut National de la Recherche Agronomique (INRA), UMR1331, TOXALIM (Research Centre in Food Toxicology), Université de Toulouse, Toulouse</wicri:regionArea><placeName><region type="region">Occitanie (région administrative)</region><region type="old region">Midi-Pyrénées</region><settlement type="city">Toulouse</settlement></placeName></affiliation></author><author><name sortKey="Logan Klumpler, Flora J" sort="Logan Klumpler, Flora J" uniqKey="Logan Klumpler F" first="Flora J." last="Logan-Klumpler">Flora J. Logan-Klumpler</name><affiliation wicri:level="1"><nlm:aff id="AFF2">The Wellcome Trust Sanger Institute, Hinxton, Cambridge CB10 1SA, UK</nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>The Wellcome Trust Sanger Institute, Hinxton, Cambridge CB10 1SA</wicri:regionArea><wicri:noRegion>Cambridge CB10 1SA</wicri:noRegion></affiliation></author><author><name sortKey="Vinson, Florence" sort="Vinson, Florence" uniqKey="Vinson F" first="Florence" last="Vinson">Florence Vinson</name><affiliation wicri:level="3"><nlm:aff id="AFF1">Institut National de la Recherche Agronomique (INRA), UMR1331, TOXALIM (Research Centre in Food Toxicology), Université de Toulouse, Toulouse, France</nlm:aff><country xml:lang="fr">France</country><wicri:regionArea>Institut National de la Recherche Agronomique (INRA), UMR1331, TOXALIM (Research Centre in Food Toxicology), Université de Toulouse, Toulouse</wicri:regionArea><placeName><region type="region">Occitanie (région administrative)</region><region type="old region">Midi-Pyrénées</region><settlement type="city">Toulouse</settlement></placeName></affiliation></author><author><name sortKey="Cottret, Ludovic" sort="Cottret, Ludovic" uniqKey="Cottret L" first="Ludovic" last="Cottret">Ludovic Cottret</name><affiliation wicri:level="1"><nlm:aff id="AFF3">Institut National de la Recherche Agronomique (INRA), UMR441, Laboratoire des Interactions Plantes-Microorganismes (LIPM), Auzeville, France</nlm:aff><country xml:lang="fr">France</country><wicri:regionArea>Institut National de la Recherche Agronomique (INRA), UMR441, Laboratoire des Interactions Plantes-Microorganismes (LIPM), Auzeville</wicri:regionArea><wicri:noRegion>Auzeville</wicri:noRegion><wicri:noRegion>Auzeville</wicri:noRegion></affiliation></author><author><name sortKey="Merlet, Benjamin" sort="Merlet, Benjamin" uniqKey="Merlet B" first="Benjamin" last="Merlet">Benjamin Merlet</name><affiliation wicri:level="3"><nlm:aff id="AFF1">Institut National de la Recherche Agronomique (INRA), UMR1331, TOXALIM (Research Centre in Food Toxicology), Université de Toulouse, Toulouse, France</nlm:aff><country xml:lang="fr">France</country><wicri:regionArea>Institut National de la Recherche Agronomique (INRA), UMR1331, TOXALIM (Research Centre in Food Toxicology), Université de Toulouse, Toulouse</wicri:regionArea><placeName><region type="region">Occitanie (région administrative)</region><region type="old region">Midi-Pyrénées</region><settlement type="city">Toulouse</settlement></placeName></affiliation></author><author><name sortKey="Achcar, Fiona" sort="Achcar, Fiona" uniqKey="Achcar F" first="Fiona" last="Achcar">Fiona Achcar</name><affiliation wicri:level="4"><nlm:aff id="AFF4">University of Glasgow, Glasgow, Scotland, G12 8QQ, UK</nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>University of Glasgow, Glasgow, Scotland, G12 8QQ</wicri:regionArea><orgName type="university">Université de Glasgow</orgName><placeName><settlement type="city">Glasgow</settlement><region type="country">Écosse</region></placeName></affiliation></author><author><name sortKey="Boshart, Michael" sort="Boshart, Michael" uniqKey="Boshart M" first="Michael" last="Boshart">Michael Boshart</name><affiliation wicri:level="4"><nlm:aff id="AFF5">Ludwig-Maximilians-Universität München, Biocenter, 82152-Martinsried, Germany</nlm:aff><country xml:lang="fr">Allemagne</country><wicri:regionArea>Ludwig-Maximilians-Universität München, Biocenter, 82152-Martinsried</wicri:regionArea><wicri:noRegion>82152-Martinsried</wicri:noRegion><orgName type="university">Université Louis-et-Maximilien de Munich</orgName><placeName><settlement type="city">Munich</settlement><region type="land" nuts="1">Bavière</region><region type="district" nuts="2">District de Haute-Bavière</region></placeName></affiliation></author><author><name sortKey="Berriman, Matthew" sort="Berriman, Matthew" uniqKey="Berriman M" first="Matthew" last="Berriman">Matthew Berriman</name><affiliation wicri:level="1"><nlm:aff id="AFF2">The Wellcome Trust Sanger Institute, Hinxton, Cambridge CB10 1SA, UK</nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>The Wellcome Trust Sanger Institute, Hinxton, Cambridge CB10 1SA</wicri:regionArea><wicri:noRegion>Cambridge CB10 1SA</wicri:noRegion></affiliation></author><author><name sortKey="Breitling, Rainer" sort="Breitling, Rainer" uniqKey="Breitling R" first="Rainer" last="Breitling">Rainer Breitling</name><affiliation wicri:level="4"><nlm:aff id="AFF6">Manchester Institute of Biotechnology, Faculty of Life Sciences, University of Manchester, Manchester, UK</nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>Manchester Institute of Biotechnology, Faculty of Life Sciences, University of Manchester, Manchester</wicri:regionArea><placeName><settlement type="city">Manchester</settlement><region type="country">Angleterre</region><region type="région" nuts="1">Grand Manchester</region><settlement type="city">Manchester</settlement></placeName><orgName type="university">Université de Manchester</orgName></affiliation></author><author><name sortKey="Bringaud, Frederic" sort="Bringaud, Frederic" uniqKey="Bringaud F" first="Frédéric" last="Bringaud">Frédéric Bringaud</name><affiliation wicri:level="1"><nlm:aff id="AFF7">CNRS, Bordeaux, 33076, France</nlm:aff><country xml:lang="fr">France</country><wicri:regionArea>CNRS, Bordeaux, 33076</wicri:regionArea><wicri:noRegion>33076</wicri:noRegion><wicri:noRegion>33076</wicri:noRegion></affiliation></author><author><name sortKey="Butikofer, Peter" sort="Butikofer, Peter" uniqKey="Butikofer P" first="Peter" last="Bütikofer">Peter Bütikofer</name><affiliation wicri:level="4"><nlm:aff id="AFF8">University of Bern, Bern, CH-3012, Switzerland</nlm:aff><country xml:lang="fr">Suisse</country><wicri:regionArea>University of Bern, Bern, CH-3012</wicri:regionArea><orgName type="university">Université de Berne</orgName><placeName><settlement type="city">Berne</settlement><region nuts="3" type="region">Canton de Berne</region></placeName></affiliation></author><author><name sortKey="Cattanach, Amy M" sort="Cattanach, Amy M" uniqKey="Cattanach A" first="Amy M." last="Cattanach">Amy M. Cattanach</name><affiliation wicri:level="4"><nlm:aff id="AFF4">University of Glasgow, Glasgow, Scotland, G12 8QQ, UK</nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>University of Glasgow, Glasgow, Scotland, G12 8QQ</wicri:regionArea><orgName type="university">Université de Glasgow</orgName><placeName><settlement type="city">Glasgow</settlement><region type="country">Écosse</region></placeName></affiliation></author><author><name sortKey="Bannerman Chukualim, Bridget" sort="Bannerman Chukualim, Bridget" uniqKey="Bannerman Chukualim B" first="Bridget" last="Bannerman-Chukualim">Bridget Bannerman-Chukualim</name><affiliation wicri:level="1"><nlm:aff id="AFF2">The Wellcome Trust Sanger Institute, Hinxton, Cambridge CB10 1SA, UK</nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>The Wellcome Trust Sanger Institute, Hinxton, Cambridge CB10 1SA</wicri:regionArea><wicri:noRegion>Cambridge CB10 1SA</wicri:noRegion></affiliation></author><author><name sortKey="Creek, Darren J" sort="Creek, Darren J" uniqKey="Creek D" first="Darren J." last="Creek">Darren J. Creek</name><affiliation wicri:level="1"><nlm:aff id="AFF9">Monash Institute of Pharmaceutical Sciences, Monash University, Parkville 3052, Australia</nlm:aff><country xml:lang="fr">Australie</country><wicri:regionArea>Monash Institute of Pharmaceutical Sciences, Monash University, Parkville 3052</wicri:regionArea><wicri:noRegion>Parkville 3052</wicri:noRegion></affiliation></author><author><name sortKey="Crouch, Kathryn" sort="Crouch, Kathryn" uniqKey="Crouch K" first="Kathryn" last="Crouch">Kathryn Crouch</name><affiliation wicri:level="4"><nlm:aff id="AFF4">University of Glasgow, Glasgow, Scotland, G12 8QQ, UK</nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>University of Glasgow, Glasgow, Scotland, G12 8QQ</wicri:regionArea><orgName type="university">Université de Glasgow</orgName><placeName><settlement type="city">Glasgow</settlement><region type="country">Écosse</region></placeName></affiliation></author><author><name sortKey="De Koning, Harry P" sort="De Koning, Harry P" uniqKey="De Koning H" first="Harry P." last="De Koning">Harry P. De Koning</name><affiliation wicri:level="4"><nlm:aff id="AFF4">University of Glasgow, Glasgow, Scotland, G12 8QQ, UK</nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>University of Glasgow, Glasgow, Scotland, G12 8QQ</wicri:regionArea><orgName type="university">Université de Glasgow</orgName><placeName><settlement type="city">Glasgow</settlement><region type="country">Écosse</region></placeName></affiliation></author><author><name sortKey="Denise, Hubert" sort="Denise, Hubert" uniqKey="Denise H" first="Hubert" last="Denise">Hubert Denise</name><affiliation wicri:level="1"><nlm:aff id="AFF10">European Bioinformatics Institute (EMBL-EBI), Hinxton, Cambridge, CB10 1SD, UK</nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>European Bioinformatics Institute (EMBL-EBI), Hinxton, Cambridge, CB10 1SD</wicri:regionArea><wicri:noRegion>CB10 1SD</wicri:noRegion></affiliation></author><author><name sortKey="Ebikeme, Charles" sort="Ebikeme, Charles" uniqKey="Ebikeme C" first="Charles" last="Ebikeme">Charles Ebikeme</name><affiliation wicri:level="3"><nlm:aff id="AFF11">ISSC, UNESCO, F-75732 CEDEX 15, Paris, France</nlm:aff><country xml:lang="fr">France</country><wicri:regionArea>ISSC, UNESCO, F-75732 CEDEX 15, Paris</wicri:regionArea><placeName><region type="region">Île-de-France</region><region type="old region">Île-de-France</region><settlement type="city">Paris</settlement></placeName></affiliation></author><author><name sortKey="Fairlamb, Alan H" sort="Fairlamb, Alan H" uniqKey="Fairlamb A" first="Alan H." last="Fairlamb">Alan H. Fairlamb</name><affiliation wicri:level="1"><nlm:aff id="AFF12">University of Dundee, Dundee, Scotland, DD1 4HN, UK</nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>University of Dundee, Dundee, Scotland, DD1 4HN</wicri:regionArea><wicri:noRegion>DD1 4HN</wicri:noRegion></affiliation></author><author><name sortKey="Ferguson, Michael A J" sort="Ferguson, Michael A J" uniqKey="Ferguson M" first="Michael A. J." last="Ferguson">Michael A. J. Ferguson</name><affiliation wicri:level="1"><nlm:aff id="AFF12">University of Dundee, Dundee, Scotland, DD1 4HN, UK</nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>University of Dundee, Dundee, Scotland, DD1 4HN</wicri:regionArea><wicri:noRegion>DD1 4HN</wicri:noRegion></affiliation></author><author><name sortKey="Ginger, Michael L" sort="Ginger, Michael L" uniqKey="Ginger M" first="Michael L." last="Ginger">Michael L. Ginger</name><affiliation wicri:level="1"><nlm:aff id="AFF13">Divisionof Biomedical and Life Sciences, Lancaster University, Bailrigg, Lancaster, LA1 4YG, UK</nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>Divisionof Biomedical and Life Sciences, Lancaster University, Bailrigg, Lancaster, LA1 4YG</wicri:regionArea><wicri:noRegion>LA1 4YG</wicri:noRegion></affiliation></author><author><name sortKey="Hertz Fowler, Christiane" sort="Hertz Fowler, Christiane" uniqKey="Hertz Fowler C" first="Christiane" last="Hertz-Fowler">Christiane Hertz-Fowler</name><affiliation wicri:level="1"><nlm:aff id="AFF14">University of Liverpool, Liverpool, Merseyside L69 3BX, UK</nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>University of Liverpool, Liverpool, Merseyside L69 3BX</wicri:regionArea><wicri:noRegion>Merseyside L69 3BX</wicri:noRegion></affiliation></author><author><name sortKey="Kerkhoven, Eduard J" sort="Kerkhoven, Eduard J" uniqKey="Kerkhoven E" first="Eduard J." last="Kerkhoven">Eduard J. Kerkhoven</name><affiliation wicri:level="1"><nlm:aff id="AFF15">Chalmers University of Technology, Kemivägen 10, 412 96, Göteborg, Sweden</nlm:aff><country xml:lang="fr">Suède</country><wicri:regionArea>Chalmers University of Technology, Kemivägen 10, 412 96, Göteborg</wicri:regionArea><wicri:noRegion>Göteborg</wicri:noRegion></affiliation></author><author><name sortKey="M Ser, Pascal" sort="M Ser, Pascal" uniqKey="M Ser P" first="Pascal" last="M Ser">Pascal M Ser</name><affiliation wicri:level="1"><nlm:aff id="AFF16">Swiss Tropical and Public Health Institute, Socinstr. 57, Basel 4051, Switzerland</nlm:aff><country xml:lang="fr">Suisse</country><wicri:regionArea>Swiss Tropical and Public Health Institute, Socinstr. 57, Basel 4051</wicri:regionArea><wicri:noRegion>Basel 4051</wicri:noRegion></affiliation></author><author><name sortKey="Michels, Paul A M" sort="Michels, Paul A M" uniqKey="Michels P" first="Paul A. M." last="Michels">Paul A. M. Michels</name><affiliation wicri:level="4"><nlm:aff id="AFF17">University of Edinburgh, Mayfield Road, Edinburgh EH9 3JU, UK</nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>University of Edinburgh, Mayfield Road, Edinburgh EH9 3JU</wicri:regionArea><orgName type="university">Université d'Édimbourg</orgName><placeName><settlement type="city">Édimbourg</settlement><region type="country">Écosse</region></placeName></affiliation></author><author><name sortKey="Nayak, Archana" sort="Nayak, Archana" uniqKey="Nayak A" first="Archana" last="Nayak">Archana Nayak</name><affiliation wicri:level="4"><nlm:aff id="AFF4">University of Glasgow, Glasgow, Scotland, G12 8QQ, UK</nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>University of Glasgow, Glasgow, Scotland, G12 8QQ</wicri:regionArea><orgName type="university">Université de Glasgow</orgName><placeName><settlement type="city">Glasgow</settlement><region type="country">Écosse</region></placeName></affiliation></author><author><name sortKey="Nes, David W" sort="Nes, David W" uniqKey="Nes D" first="David W." last="Nes">David W. Nes</name><affiliation wicri:level="2"><nlm:aff id="AFF18">Texas Tech University, Lubbock, TX, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Texas Tech University, Lubbock, TX</wicri:regionArea><placeName><region type="state">Texas</region></placeName></affiliation></author><author><name sortKey="Nolan, Derek P" sort="Nolan, Derek P" uniqKey="Nolan D" first="Derek P." last="Nolan">Derek P. Nolan</name><affiliation wicri:level="1"><nlm:aff id="AFF19">Trinity College Dublin, Dublin 2, Ireland</nlm:aff><country xml:lang="fr">Irlande (pays)</country><wicri:regionArea>Trinity College Dublin, Dublin 2</wicri:regionArea><wicri:noRegion>Dublin 2</wicri:noRegion></affiliation></author><author><name sortKey="Olsen, Christian" sort="Olsen, Christian" uniqKey="Olsen C" first="Christian" last="Olsen">Christian Olsen</name><affiliation wicri:level="2"><nlm:aff id="AFF20">Biomatters Inc. 60 Park Place, Suite 2100, Newark, NJ, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Biomatters Inc. 60 Park Place, Suite 2100, Newark, NJ</wicri:regionArea><placeName><region type="state">New Jersey</region></placeName></affiliation></author><author><name sortKey="Silva Franco, Fatima" sort="Silva Franco, Fatima" uniqKey="Silva Franco F" first="Fatima" last="Silva-Franco">Fatima Silva-Franco</name><affiliation wicri:level="1"><nlm:aff id="AFF14">University of Liverpool, Liverpool, Merseyside L69 3BX, UK</nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>University of Liverpool, Liverpool, Merseyside L69 3BX</wicri:regionArea><wicri:noRegion>Merseyside L69 3BX</wicri:noRegion></affiliation></author><author><name sortKey="Smith, Terry K" sort="Smith, Terry K" uniqKey="Smith T" first="Terry K." last="Smith">Terry K. Smith</name><affiliation wicri:level="1"><nlm:aff id="AFF21">University of St Andrews, St Andrews, Scotland, KY16 9ST, UK</nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>University of St Andrews, St Andrews, Scotland, KY16 9ST</wicri:regionArea><wicri:noRegion>KY16 9ST</wicri:noRegion></affiliation></author><author><name sortKey="Taylor, Martin C" sort="Taylor, Martin C" uniqKey="Taylor M" first="Martin C." last="Taylor">Martin C. Taylor</name><affiliation wicri:level="1"><nlm:aff id="AFF22">LSHTM, London, WC1E 7HT, UK</nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>LSHTM, London, WC1E 7HT</wicri:regionArea><wicri:noRegion>WC1E 7HT</wicri:noRegion></affiliation></author><author><name sortKey="Tielens, Aloysius G M" sort="Tielens, Aloysius G M" uniqKey="Tielens A" first="Aloysius G. M." last="Tielens">Aloysius G. M. Tielens</name><affiliation wicri:level="4"><nlm:aff id="AFF23">Utrecht University, Utrecht, 3508 TD, The Netherlands</nlm:aff><country xml:lang="fr">Pays-Bas</country><wicri:regionArea>Utrecht University, Utrecht, 3508 TD</wicri:regionArea><orgName type="university">Université d'Utrecht</orgName><placeName><settlement type="city">Utrecht</settlement><region nuts="2">Utrecht (province)</region></placeName></affiliation><affiliation wicri:level="1"><nlm:aff id="AFF24">Erasmus University Medical Center, Rotterdam, 3015 CE, The Netherlands</nlm:aff><country xml:lang="fr">Pays-Bas</country><wicri:regionArea>Erasmus University Medical Center, Rotterdam, 3015 CE</wicri:regionArea><wicri:noRegion>3015 CE</wicri:noRegion></affiliation></author><author><name sortKey="Urbaniak, Michael D" sort="Urbaniak, Michael D" uniqKey="Urbaniak M" first="Michael D." last="Urbaniak">Michael D. Urbaniak</name><affiliation wicri:level="1"><nlm:aff id="AFF13">Divisionof Biomedical and Life Sciences, Lancaster University, Bailrigg, Lancaster, LA1 4YG, UK</nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>Divisionof Biomedical and Life Sciences, Lancaster University, Bailrigg, Lancaster, LA1 4YG</wicri:regionArea><wicri:noRegion>LA1 4YG</wicri:noRegion></affiliation></author><author><name sortKey="Van Hellemond, Jaap J" sort="Van Hellemond, Jaap J" uniqKey="Van Hellemond J" first="Jaap J." last="Van Hellemond">Jaap J. Van Hellemond</name><affiliation wicri:level="1"><nlm:aff id="AFF24">Erasmus University Medical Center, Rotterdam, 3015 CE, The Netherlands</nlm:aff><country xml:lang="fr">Pays-Bas</country><wicri:regionArea>Erasmus University Medical Center, Rotterdam, 3015 CE</wicri:regionArea><wicri:noRegion>3015 CE</wicri:noRegion></affiliation></author><author><name sortKey="Vincent, Isabel M" sort="Vincent, Isabel M" uniqKey="Vincent I" first="Isabel M." last="Vincent">Isabel M. Vincent</name><affiliation wicri:level="4"><nlm:aff id="AFF4">University of Glasgow, Glasgow, Scotland, G12 8QQ, UK</nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>University of Glasgow, Glasgow, Scotland, G12 8QQ</wicri:regionArea><orgName type="university">Université de Glasgow</orgName><placeName><settlement type="city">Glasgow</settlement><region type="country">Écosse</region></placeName></affiliation></author><author><name sortKey="Wilkinson, Shane R" sort="Wilkinson, Shane R" uniqKey="Wilkinson S" first="Shane R." last="Wilkinson">Shane R. Wilkinson</name><affiliation wicri:level="4"><nlm:aff id="AFF25">Queen Mary University of London, London E1 4NS, UK</nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>Queen Mary University of London, London E1 4NS</wicri:regionArea><orgName type="university">Université de Londres</orgName><placeName><settlement type="city">Londres</settlement><region type="country">Angleterre</region><region type="région" nuts="1">Grand Londres</region></placeName></affiliation></author><author><name sortKey="Wyllie, Susan" sort="Wyllie, Susan" uniqKey="Wyllie S" first="Susan" last="Wyllie">Susan Wyllie</name><affiliation wicri:level="1"><nlm:aff id="AFF12">University of Dundee, Dundee, Scotland, DD1 4HN, UK</nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>University of Dundee, Dundee, Scotland, DD1 4HN</wicri:regionArea><wicri:noRegion>DD1 4HN</wicri:noRegion></affiliation></author><author><name sortKey="Opperdoes, Fred R" sort="Opperdoes, Fred R" uniqKey="Opperdoes F" first="Fred R." last="Opperdoes">Fred R. Opperdoes</name><affiliation wicri:level="1"><nlm:aff id="AFF26">University of Louvain, Brussels, B-1200, Belgium</nlm:aff><country xml:lang="fr">Belgique</country><wicri:regionArea>University of Louvain, Brussels, B-1200</wicri:regionArea><wicri:noRegion>B-1200</wicri:noRegion></affiliation></author><author><name sortKey="Barrett, Michael P" sort="Barrett, Michael P" uniqKey="Barrett M" first="Michael P." last="Barrett">Michael P. Barrett</name><affiliation wicri:level="4"><nlm:aff id="AFF4">University of Glasgow, Glasgow, Scotland, G12 8QQ, UK</nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>University of Glasgow, Glasgow, Scotland, G12 8QQ</wicri:regionArea><orgName type="university">Université de Glasgow</orgName><placeName><settlement type="city">Glasgow</settlement><region type="country">Écosse</region></placeName></affiliation></author><author><name sortKey="Jourdan, Fabien" sort="Jourdan, Fabien" uniqKey="Jourdan F" first="Fabien" last="Jourdan">Fabien Jourdan</name><affiliation wicri:level="3"><nlm:aff id="AFF1">Institut National de la Recherche Agronomique (INRA), UMR1331, TOXALIM (Research Centre in Food Toxicology), Université de Toulouse, Toulouse, France</nlm:aff><country xml:lang="fr">France</country><wicri:regionArea>Institut National de la Recherche Agronomique (INRA), UMR1331, TOXALIM (Research Centre in Food Toxicology), Université de Toulouse, Toulouse</wicri:regionArea><placeName><region type="region">Occitanie (région administrative)</region><region type="old region">Midi-Pyrénées</region><settlement type="city">Toulouse</settlement></placeName></affiliation></author></analytic><series><title level="j">Nucleic Acids Research</title><idno type="ISSN">0305-1048</idno><idno type="eISSN">1362-4962</idno><imprint><date when="2014">2014</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Data Mining</term><term>Databases, Chemical</term><term>Internet</term><term>Metabolic Networks and Pathways</term><term>Proteomics</term><term>Trypanosoma brucei brucei (genetics)</term><term>Trypanosoma brucei brucei (metabolism)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Bases de données chimiques</term><term>Fouille de données</term><term>Internet</term><term>Protéomique</term><term>Trypanosoma brucei brucei (génétique)</term><term>Trypanosoma brucei brucei (métabolisme)</term><term>Voies et réseaux métaboliques</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Trypanosoma brucei brucei</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Trypanosoma brucei brucei</term></keywords><keywords scheme="MESH" qualifier="metabolism" xml:lang="en"><term>Trypanosoma brucei brucei</term></keywords><keywords scheme="MESH" qualifier="métabolisme" xml:lang="fr"><term>Trypanosoma brucei brucei</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Data Mining</term><term>Databases, Chemical</term><term>Internet</term><term>Metabolic Networks and Pathways</term><term>Proteomics</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Bases de données chimiques</term><term>Fouille de données</term><term>Internet</term><term>Protéomique</term><term>Voies et réseaux métaboliques</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>The metabolic network of a cell represents the catabolic and anabolic reactions that interconvert small molecules (metabolites) through the activity of enzymes, transporters and non-catalyzed chemical reactions. Our understanding of individual metabolic networks is increasing as we learn more about the enzymes that are active in particular cells under particular conditions and as technologies advance to allow detailed measurements of the cellular metabolome. Metabolic network databases are of increasing importance in allowing us to contextualise data sets emerging from transcriptomic, proteomic and metabolomic experiments. Here we present a dynamic database, TrypanoCyc (<ext-link ext-link-type="uri" xlink:href="http://www.metexplore.fr/trypanocyc/">http://www.metexplore.fr/trypanocyc/</ext-link>), which describes the generic and condition-specific metabolic network of <italic>Trypanosoma brucei</italic>, a parasitic protozoan responsible for human and animal African trypanosomiasis. In addition to enabling navigation through the BioCyc-based TrypanoCyc interface, we have also implemented a network-based representation of the information through MetExplore, yielding a novel environment in which to visualise the metabolism of this important parasite.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Brun, R" uniqKey="Brun R">R. Brun</name></author><author><name sortKey="Blum, J" uniqKey="Blum J">J. Blum</name></author><author><name sortKey="Chappuis, F" uniqKey="Chappuis F">F. Chappuis</name></author><author><name sortKey="Burri, C" uniqKey="Burri C">C. Burri</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Barrett, M P" uniqKey="Barrett M">M.P. Barrett</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Vincent, I M" uniqKey="Vincent I">I.M. Vincent</name></author><author><name sortKey="Creek, D J" uniqKey="Creek D">D.J. 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Rahmanian</name></author></analytic></biblStruct></listBibl></div1></back></TEI><affiliations><list><country><li>Allemagne</li><li>Australie</li><li>Belgique</li><li>France</li><li>Irlande (pays)</li><li>Pays-Bas</li><li>Royaume-Uni</li><li>Suisse</li><li>Suède</li><li>États-Unis</li></country><region><li>Angleterre</li><li>Bavière</li><li>Canton de Berne</li><li>District de Haute-Bavière</li><li>Grand Londres</li><li>Grand Manchester</li><li>Midi-Pyrénées</li><li>New Jersey</li><li>Occitanie (région administrative)</li><li>Texas</li><li>Utrecht (province)</li><li>Écosse</li><li>Île-de-France</li></region><settlement><li>Berne</li><li>Glasgow</li><li>Londres</li><li>Manchester</li><li>Munich</li><li>Paris</li><li>Toulouse</li><li>Utrecht</li><li>Édimbourg</li></settlement><orgName><li>Université Louis-et-Maximilien de Munich</li><li>Université d'Utrecht</li><li>Université d'Édimbourg</li><li>Université de Berne</li><li>Université de Glasgow</li><li>Université de Londres</li><li>Université de Manchester</li></orgName></list><tree><country name="France"><region name="Occitanie (région administrative)"><name sortKey="Shameer, Sanu" sort="Shameer, Sanu" uniqKey="Shameer S" first="Sanu" last="Shameer">Sanu Shameer</name></region><name sortKey="Bringaud, Frederic" sort="Bringaud, Frederic" uniqKey="Bringaud F" first="Frédéric" last="Bringaud">Frédéric Bringaud</name><name sortKey="Cottret, Ludovic" sort="Cottret, Ludovic" uniqKey="Cottret L" first="Ludovic" last="Cottret">Ludovic Cottret</name><name sortKey="Ebikeme, Charles" sort="Ebikeme, Charles" uniqKey="Ebikeme C" first="Charles" last="Ebikeme">Charles Ebikeme</name><name sortKey="Jourdan, Fabien" sort="Jourdan, Fabien" uniqKey="Jourdan F" first="Fabien" last="Jourdan">Fabien Jourdan</name><name sortKey="Merlet, Benjamin" sort="Merlet, Benjamin" uniqKey="Merlet B" first="Benjamin" last="Merlet">Benjamin Merlet</name><name sortKey="Vinson, Florence" sort="Vinson, Florence" uniqKey="Vinson F" first="Florence" last="Vinson">Florence Vinson</name></country><country name="Royaume-Uni"><noRegion><name sortKey="Logan Klumpler, Flora J" sort="Logan Klumpler, Flora J" uniqKey="Logan Klumpler F" first="Flora J." last="Logan-Klumpler">Flora J. 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Cattanach</name><name sortKey="Crouch, Kathryn" sort="Crouch, Kathryn" uniqKey="Crouch K" first="Kathryn" last="Crouch">Kathryn Crouch</name><name sortKey="De Koning, Harry P" sort="De Koning, Harry P" uniqKey="De Koning H" first="Harry P." last="De Koning">Harry P. De Koning</name><name sortKey="Denise, Hubert" sort="Denise, Hubert" uniqKey="Denise H" first="Hubert" last="Denise">Hubert Denise</name><name sortKey="Fairlamb, Alan H" sort="Fairlamb, Alan H" uniqKey="Fairlamb A" first="Alan H." last="Fairlamb">Alan H. Fairlamb</name><name sortKey="Ferguson, Michael A J" sort="Ferguson, Michael A J" uniqKey="Ferguson M" first="Michael A. J." last="Ferguson">Michael A. J. Ferguson</name><name sortKey="Ginger, Michael L" sort="Ginger, Michael L" uniqKey="Ginger M" first="Michael L." last="Ginger">Michael L. Ginger</name><name sortKey="Hertz Fowler, Christiane" sort="Hertz Fowler, Christiane" uniqKey="Hertz Fowler C" first="Christiane" last="Hertz-Fowler">Christiane Hertz-Fowler</name><name sortKey="Michels, Paul A M" sort="Michels, Paul A M" uniqKey="Michels P" first="Paul A. M." last="Michels">Paul A. M. Michels</name><name sortKey="Nayak, Archana" sort="Nayak, Archana" uniqKey="Nayak A" first="Archana" last="Nayak">Archana Nayak</name><name sortKey="Silva Franco, Fatima" sort="Silva Franco, Fatima" uniqKey="Silva Franco F" first="Fatima" last="Silva-Franco">Fatima Silva-Franco</name><name sortKey="Smith, Terry K" sort="Smith, Terry K" uniqKey="Smith T" first="Terry K." last="Smith">Terry K. Smith</name><name sortKey="Taylor, Martin C" sort="Taylor, Martin C" uniqKey="Taylor M" first="Martin C." last="Taylor">Martin C. Taylor</name><name sortKey="Urbaniak, Michael D" sort="Urbaniak, Michael D" uniqKey="Urbaniak M" first="Michael D." last="Urbaniak">Michael D. Urbaniak</name><name sortKey="Vincent, Isabel M" sort="Vincent, Isabel M" uniqKey="Vincent I" first="Isabel M." last="Vincent">Isabel M. Vincent</name><name sortKey="Wilkinson, Shane R" sort="Wilkinson, Shane R" uniqKey="Wilkinson S" first="Shane R." last="Wilkinson">Shane R. Wilkinson</name><name sortKey="Wyllie, Susan" sort="Wyllie, Susan" uniqKey="Wyllie S" first="Susan" last="Wyllie">Susan Wyllie</name></country><country name="Allemagne"><region name="Bavière"><name sortKey="Boshart, Michael" sort="Boshart, Michael" uniqKey="Boshart M" first="Michael" last="Boshart">Michael Boshart</name></region></country><country name="Suisse"><region name="Canton de Berne"><name sortKey="Butikofer, Peter" sort="Butikofer, Peter" uniqKey="Butikofer P" first="Peter" last="Bütikofer">Peter Bütikofer</name></region><name sortKey="M Ser, Pascal" sort="M Ser, Pascal" uniqKey="M Ser P" first="Pascal" last="M Ser">Pascal M Ser</name></country><country name="Australie"><noRegion><name sortKey="Creek, Darren J" sort="Creek, Darren J" uniqKey="Creek D" first="Darren J." last="Creek">Darren J. Creek</name></noRegion></country><country name="Suède"><noRegion><name sortKey="Kerkhoven, Eduard J" sort="Kerkhoven, Eduard J" uniqKey="Kerkhoven E" first="Eduard J." last="Kerkhoven">Eduard J. Kerkhoven</name></noRegion></country><country name="États-Unis"><region name="Texas"><name sortKey="Nes, David W" sort="Nes, David W" uniqKey="Nes D" first="David W." last="Nes">David W. Nes</name></region><name sortKey="Olsen, Christian" sort="Olsen, Christian" uniqKey="Olsen C" first="Christian" last="Olsen">Christian Olsen</name></country><country name="Irlande (pays)"><noRegion><name sortKey="Nolan, Derek P" sort="Nolan, Derek P" uniqKey="Nolan D" first="Derek P." last="Nolan">Derek P. Nolan</name></noRegion></country><country name="Pays-Bas"><region name="Utrecht (province)"><name sortKey="Tielens, Aloysius G M" sort="Tielens, Aloysius G M" uniqKey="Tielens A" first="Aloysius G. M." last="Tielens">Aloysius G. M. Tielens</name></region><name sortKey="Tielens, Aloysius G M" sort="Tielens, Aloysius G M" uniqKey="Tielens A" first="Aloysius G. M." last="Tielens">Aloysius G. M. Tielens</name><name sortKey="Van Hellemond, Jaap J" sort="Van Hellemond, Jaap J" uniqKey="Van Hellemond J" first="Jaap J." last="Van Hellemond">Jaap J. Van Hellemond</name></country><country name="Belgique"><noRegion><name sortKey="Opperdoes, Fred R" sort="Opperdoes, Fred R" uniqKey="Opperdoes F" first="Fred R." last="Opperdoes">Fred R. Opperdoes</name></noRegion></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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